Sequence Alignment and Location Tracking
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matrix[0][1] = 1
matrix[0][2] = 2
matrix[0][3] = 3
matrix[0][4] = 4
matrix[0][5] = 5
matrix[0][6] = 6
matrix[0][7] = 7
matrix[0][8] = 8
matrix[0][9] = 9
matrix[0][10] = 10
matrix[0][11] = 11
matrix[0][12] = 12
matrix[0][13] = 13
matrix[0][14] = 14
matrix[0][15] = 15
matrix[0][16] = 16
matrix[0][17] = 17
matrix[0][18] = 18
matrix[0][19] = 19
matrix[0][20] = 20
matrix[0][21] = 21
matrix[0][22] = 22
matrix[0][23] = 23
matrix[0][24] = 24
matrix[0][25] = 25
matrix[0][26] = 26
matrix[0][27] = 27
matrix[0][28] = 28
matrix[0][29] = 29
matrix[1][0] = 1
matrix[2][0] = 2
matrix[3][0] = 3
matrix[4][0] = 4
matrix[5][0] = 5
matrix[6][0] = 6
matrix[7][0] = 7
matrix[8][0] = 8
matrix[9][0] = 9
matrix[10][0] = 10
template[0] = chk and data[0] = chk
Compare 0 2 2
template[0] = chk and data[1] = wt
Compare 2 3 1
template[0] = chk and data[2] = chng
Compare 3 4 2
template[0] = chk and data[3] = chk
Compare 3 5 3
template[0] = chk and data[4] = tt
Compare 5 6 4
template[0] = chk and data[5] = trha
Compare 6 7 5
template[0] = chk and data[6] = htrha
Compare 7 8 6
template[0] = chk and data[7] = rnst
Compare 8 9 7
template[0] = chk and data[8] = trha
Compare 9 10 8
template[0] = chk and data[9] = sdsur
Compare 10 11 9
template[0] = chk and data[10] = sdsur
Compare 11 12 10
template[0] = chk and data[11] = sdsun
Compare 12 13 11
template[0] = chk and data[12] = sdsur
Compare 13 14 12
template[0] = chk and data[13] = sdsun
Compare 14 15 13
template[0] = chk and data[14] = sdsur
Compare 15 16 14
template[0] = chk and data[15] = rwt
Compare 16 17 15
template[0] = chk and data[16] = rwt
Compare 17 18 16
template[0] = chk and data[17] = exam
Compare 18 19 17
template[0] = chk and data[18] = exam
Compare 19 20 18
template[0] = chk and data[19] = exam
Compare 20 21 19
template[0] = chk and data[20] = hall
Compare 21 22 20
template[0] = chk and data[21] = trha
Compare 22 23 21
template[0] = chk and data[22] = htrha
Compare 23 24 22
template[0] = chk and data[23] = trha
Compare 24 25 23
template[0] = chk and data[24] = tt
Compare 25 26 24
template[0] = chk and data[25] = tr
Compare 26 27 25
template[0] = chk and data[26] = htrha
Compare 27 28 26
template[0] = chk and data[27] = sdsur
Compare 28 29 27
template[0] = chk and data[28] = sdsun
Compare 29 30 28
template[1] = wt and data[0] = chk
Compare 2 1 3
template[1] = wt and data[1] = wt
Compare 0 2 2
template[1] = wt and data[2] = chng
Compare 2 3 1
template[1] = wt and data[3] = chk
Compare 3 4 2
template[1] = wt and data[4] = tt
Compare 4 5 3
template[1] = wt and data[5] = trha
Compare 5 6 4
template[1] = wt and data[6] = htrha
Compare 6 7 5
template[1] = wt and data[7] = rnst
Compare 7 8 6
template[1] = wt and data[8] = trha
Compare 8 9 7
template[1] = wt and data[9] = sdsur
Compare 9 10 8
template[1] = wt and data[10] = sdsur
Compare 10 11 9
template[1] = wt and data[11] = sdsun
Compare 11 12 10
template[1] = wt and data[12] = sdsur
Compare 12 13 11
template[1] = wt and data[13] = sdsun
Compare 13 14 12
template[1] = wt and data[14] = sdsur
Compare 14 15 13
template[1] = wt and data[15] = rwt
Compare 15 16 14
template[1] = wt and data[16] = rwt
Compare 16 17 15
template[1] = wt and data[17] = exam
Compare 17 18 16
template[1] = wt and data[18] = exam
Compare 18 19 17
template[1] = wt and data[19] = exam
Compare 19 20 18
template[1] = wt and data[20] = hall
Compare 20 21 19
template[1] = wt and data[21] = trha
Compare 21 22 20
template[1] = wt and data[22] = htrha
Compare 22 23 21
template[1] = wt and data[23] = trha
Compare 23 24 22
template[1] = wt and data[24] = tt
Compare 24 25 23
template[1] = wt and data[25] = tr
Compare 25 26 24
template[1] = wt and data[26] = htrha
Compare 26 27 25
template[1] = wt and data[27] = sdsur
Compare 27 28 26
template[1] = wt and data[28] = sdsun
Compare 28 29 27
template[2] = chng and data[0] = chk
Compare 3 2 4
template[2] = chng and data[1] = wt
Compare 2 1 3
template[2] = chng and data[2] = chng
Compare 0 2 2
template[2] = chng and data[3] = chk
Compare 2 3 1
template[2] = chng and data[4] = tt
Compare 3 4 2
template[2] = chng and data[5] = trha
Compare 4 5 3
template[2] = chng and data[6] = htrha
Compare 5 6 4
template[2] = chng and data[7] = rnst
Compare 6 7 5
template[2] = chng and data[8] = trha
Compare 7 8 6
template[2] = chng and data[9] = sdsur
Compare 8 9 7
template[2] = chng and data[10] = sdsur
Compare 9 10 8
template[2] = chng and data[11] = sdsun
Compare 10 11 9
template[2] = chng and data[12] = sdsur
Compare 11 12 10
template[2] = chng and data[13] = sdsun
Compare 12 13 11
template[2] = chng and data[14] = sdsur
Compare 13 14 12
template[2] = chng and data[15] = rwt
Compare 14 15 13
template[2] = chng and data[16] = rwt
Compare 15 16 14
template[2] = chng and data[17] = exam
Compare 16 17 15
template[2] = chng and data[18] = exam
Compare 17 18 16
template[2] = chng and data[19] = exam
Compare 18 19 17
template[2] = chng and data[20] = hall
Compare 19 20 18
template[2] = chng and data[21] = trha
Compare 20 21 19
template[2] = chng and data[22] = htrha
Compare 21 22 20
template[2] = chng and data[23] = trha
Compare 22 23 21
template[2] = chng and data[24] = tt
Compare 23 24 22
template[2] = chng and data[25] = tr
Compare 24 25 23
template[2] = chng and data[26] = htrha
Compare 25 26 24
template[2] = chng and data[27] = sdsur
Compare 26 27 25
template[2] = chng and data[28] = sdsun
Compare 27 28 26
template[3] = sdsur and data[0] = chk
Compare 4 3 5
template[3] = sdsur and data[1] = wt
Compare 3 2 4
template[3] = sdsur and data[2] = chng
Compare 2 1 3
template[3] = sdsur and data[3] = chk
Compare 1 2 2
template[3] = sdsur and data[4] = tt
Compare 2 3 2
template[3] = sdsur and data[5] = trha
Compare 3 4 3
template[3] = sdsur and data[6] = htrha
Compare 4 5 4
template[3] = sdsur and data[7] = rnst
Compare 5 6 5
template[3] = sdsur and data[8] = trha
Compare 6 7 6
template[3] = sdsur and data[9] = sdsur
Compare 6 8 7
template[3] = sdsur and data[10] = sdsur
Compare 7 9 7
template[3] = sdsur and data[11] = sdsun
Compare 9 10 8
template[3] = sdsur and data[12] = sdsur
Compare 9 11 9
template[3] = sdsur and data[13] = sdsun
Compare 11 12 10
template[3] = sdsur and data[14] = sdsur
Compare 11 13 11
template[3] = sdsur and data[15] = rwt
Compare 13 14 12
template[3] = sdsur and data[16] = rwt
Compare 14 15 13
template[3] = sdsur and data[17] = exam
Compare 15 16 14
template[3] = sdsur and data[18] = exam
Compare 16 17 15
template[3] = sdsur and data[19] = exam
Compare 17 18 16
template[3] = sdsur and data[20] = hall
Compare 18 19 17
template[3] = sdsur and data[21] = trha
Compare 19 20 18
template[3] = sdsur and data[22] = htrha
Compare 20 21 19
template[3] = sdsur and data[23] = trha
Compare 21 22 20
template[3] = sdsur and data[24] = tt
Compare 22 23 21
template[3] = sdsur and data[25] = tr
Compare 23 24 22
template[3] = sdsur and data[26] = htrha
Compare 24 25 23
template[3] = sdsur and data[27] = sdsur
Compare 24 26 24
template[3] = sdsur and data[28] = sdsun
Compare 26 27 25
template[4] = hall and data[0] = chk
Compare 5 4 6
template[4] = hall and data[1] = wt
Compare 4 3 5
template[4] = hall and data[2] = chng
Compare 3 2 4
template[4] = hall and data[3] = chk
Compare 2 2 3
template[4] = hall and data[4] = tt
Compare 2 3 3
template[4] = hall and data[5] = trha
Compare 3 4 3
template[4] = hall and data[6] = htrha
Compare 4 5 4
template[4] = hall and data[7] = rnst
Compare 5 6 5
template[4] = hall and data[8] = trha
Compare 6 7 6
template[4] = hall and data[9] = sdsur
Compare 7 7 7
template[4] = hall and data[10] = sdsur
Compare 7 8 8
template[4] = hall and data[11] = sdsun
Compare 8 9 8
template[4] = hall and data[12] = sdsur
Compare 9 10 9
template[4] = hall and data[13] = sdsun
Compare 10 11 10
template[4] = hall and data[14] = sdsur
Compare 11 12 11
template[4] = hall and data[15] = rwt
Compare 12 13 12
template[4] = hall and data[16] = rwt
Compare 13 14 13
template[4] = hall and data[17] = exam
Compare 14 15 14
template[4] = hall and data[18] = exam
Compare 15 16 15
template[4] = hall and data[19] = exam
Compare 16 17 16
template[4] = hall and data[20] = hall
Compare 16 18 17
template[4] = hall and data[21] = trha
Compare 18 19 17
template[4] = hall and data[22] = htrha
Compare 19 20 18
template[4] = hall and data[23] = trha
Compare 20 21 19
template[4] = hall and data[24] = tt
Compare 21 22 20
template[4] = hall and data[25] = tr
Compare 22 23 21
template[4] = hall and data[26] = htrha
Compare 23 24 22
template[4] = hall and data[27] = sdsur
Compare 24 25 23
template[4] = hall and data[28] = sdsun
Compare 25 26 24
template[5] = exam and data[0] = chk
Compare 6 5 7
template[5] = exam and data[1] = wt
Compare 5 4 6
template[5] = exam and data[2] = chng
Compare 4 3 5
template[5] = exam and data[3] = chk
Compare 3 3 4
template[5] = exam and data[4] = tt
Compare 3 3 4
template[5] = exam and data[5] = trha
Compare 3 4 4
template[5] = exam and data[6] = htrha
Compare 4 5 4
template[5] = exam and data[7] = rnst
Compare 5 6 5
template[5] = exam and data[8] = trha
Compare 6 7 6
template[5] = exam and data[9] = sdsur
Compare 7 8 7
template[5] = exam and data[10] = sdsur
Compare 8 8 8
template[5] = exam and data[11] = sdsun
Compare 8 9 9
template[5] = exam and data[12] = sdsur
Compare 9 10 9
template[5] = exam and data[13] = sdsun
Compare 10 11 10
template[5] = exam and data[14] = sdsur
Compare 11 12 11
template[5] = exam and data[15] = rwt
Compare 12 13 12
template[5] = exam and data[16] = rwt
Compare 13 14 13
template[5] = exam and data[17] = exam
Compare 13 15 14
template[5] = exam and data[18] = exam
Compare 14 16 14
template[5] = exam and data[19] = exam
Compare 15 17 15
template[5] = exam and data[20] = hall
Compare 17 17 16
template[5] = exam and data[21] = trha
Compare 17 18 17
template[5] = exam and data[22] = htrha
Compare 18 19 18
template[5] = exam and data[23] = trha
Compare 19 20 19
template[5] = exam and data[24] = tt
Compare 20 21 20
template[5] = exam and data[25] = tr
Compare 21 22 21
template[5] = exam and data[26] = htrha
Compare 22 23 22
template[5] = exam and data[27] = sdsur
Compare 23 24 23
template[5] = exam and data[28] = sdsun
Compare 24 25 24
template[6] = hall and data[0] = chk
Compare 7 6 8
template[6] = hall and data[1] = wt
Compare 6 5 7
template[6] = hall and data[2] = chng
Compare 5 4 6
template[6] = hall and data[3] = chk
Compare 4 4 5
template[6] = hall and data[4] = tt
Compare 4 4 5
template[6] = hall and data[5] = trha
Compare 4 4 5
template[6] = hall and data[6] = htrha
Compare 4 5 5
template[6] = hall and data[7] = rnst
Compare 5 6 5
template[6] = hall and data[8] = trha
Compare 6 7 6
template[6] = hall and data[9] = sdsur
Compare 7 8 7
template[6] = hall and data[10] = sdsur
Compare 8 9 8
template[6] = hall and data[11] = sdsun
Compare 9 9 9
template[6] = hall and data[12] = sdsur
Compare 9 10 10
template[6] = hall and data[13] = sdsun
Compare 10 11 10
template[6] = hall and data[14] = sdsur
Compare 11 12 11
template[6] = hall and data[15] = rwt
Compare 12 13 12
template[6] = hall and data[16] = rwt
Compare 13 14 13
template[6] = hall and data[17] = exam
Compare 14 14 14
template[6] = hall and data[18] = exam
Compare 14 15 15
template[6] = hall and data[19] = exam
Compare 15 16 15
template[6] = hall and data[20] = hall
Compare 15 17 16
template[6] = hall and data[21] = trha
Compare 17 18 16
template[6] = hall and data[22] = htrha
Compare 18 19 17
template[6] = hall and data[23] = trha
Compare 19 20 18
template[6] = hall and data[24] = tt
Compare 20 21 19
template[6] = hall and data[25] = tr
Compare 21 22 20
template[6] = hall and data[26] = htrha
Compare 22 23 21
template[6] = hall and data[27] = sdsur
Compare 23 24 22
template[6] = hall and data[28] = sdsun
Compare 24 25 23
template[7] = trha and data[0] = chk
Compare 8 7 9
template[7] = trha and data[1] = wt
Compare 7 6 8
template[7] = trha and data[2] = chng
Compare 6 5 7
template[7] = trha and data[3] = chk
Compare 5 5 6
template[7] = trha and data[4] = tt
Compare 5 5 6
template[7] = trha and data[5] = trha
Compare 4 5 6
template[7] = trha and data[6] = htrha
Compare 5 5 5
template[7] = trha and data[7] = rnst
Compare 5 6 6
template[7] = trha and data[8] = trha
Compare 5 7 6
template[7] = trha and data[9] = sdsur
Compare 7 8 6
template[7] = trha and data[10] = sdsur
Compare 8 9 7
template[7] = trha and data[11] = sdsun
Compare 9 10 8
template[7] = trha and data[12] = sdsur
Compare 10 10 9
template[7] = trha and data[13] = sdsun
Compare 10 11 10
template[7] = trha and data[14] = sdsur
Compare 11 12 11
template[7] = trha and data[15] = rwt
Compare 12 13 12
template[7] = trha and data[16] = rwt
Compare 13 14 13
template[7] = trha and data[17] = exam
Compare 14 15 14
template[7] = trha and data[18] = exam
Compare 15 15 15
template[7] = trha and data[19] = exam
Compare 15 16 16
template[7] = trha and data[20] = hall
Compare 16 16 16
template[7] = trha and data[21] = trha
Compare 15 17 17
template[7] = trha and data[22] = htrha
Compare 17 18 16
template[7] = trha and data[23] = trha
Compare 17 19 17
template[7] = trha and data[24] = tt
Compare 19 20 18
template[7] = trha and data[25] = tr
Compare 20 21 19
template[7] = trha and data[26] = htrha
Compare 21 22 20
template[7] = trha and data[27] = sdsur
Compare 22 23 21
template[7] = trha and data[28] = sdsun
Compare 23 24 22
template[8] = tr and data[0] = chk
Compare 9 8 10
template[8] = tr and data[1] = wt
Compare 8 7 9
template[8] = tr and data[2] = chng
Compare 7 6 8
template[8] = tr and data[3] = chk
Compare 6 6 7
template[8] = tr and data[4] = tt
Compare 6 6 7
template[8] = tr and data[5] = trha
Compare 6 5 7
template[8] = tr and data[6] = htrha
Compare 5 6 6
template[8] = tr and data[7] = rnst
Compare 6 6 6
template[8] = tr and data[8] = trha
Compare 6 6 7
template[8] = tr and data[9] = sdsur
Compare 6 7 7
template[8] = tr and data[10] = sdsur
Compare 7 8 7
template[8] = tr and data[11] = sdsun
Compare 8 9 8
template[8] = tr and data[12] = sdsur
Compare 9 10 9
template[8] = tr and data[13] = sdsun
Compare 10 11 10
template[8] = tr and data[14] = sdsur
Compare 11 12 11
template[8] = tr and data[15] = rwt
Compare 12 13 12
template[8] = tr and data[16] = rwt
Compare 13 14 13
template[8] = tr and data[17] = exam
Compare 14 15 14
template[8] = tr and data[18] = exam
Compare 15 16 15
template[8] = tr and data[19] = exam
Compare 16 16 16
template[8] = tr and data[20] = hall
Compare 16 17 17
template[8] = tr and data[21] = trha
Compare 17 16 17
template[8] = tr and data[22] = htrha
Compare 16 17 17
template[8] = tr and data[23] = trha
Compare 17 18 17
template[8] = tr and data[24] = tt
Compare 18 19 18
template[8] = tr and data[25] = tr
Compare 18 20 19
template[8] = tr and data[26] = htrha
Compare 20 21 19
template[8] = tr and data[27] = sdsur
Compare 21 22 20
template[8] = tr and data[28] = sdsun
Compare 22 23 21
template[9] = sdsur and data[0] = chk
Compare 10 9 11
template[9] = sdsur and data[1] = wt
Compare 9 8 10
template[9] = sdsur and data[2] = chng
Compare 8 7 9
template[9] = sdsur and data[3] = chk
Compare 7 7 8
template[9] = sdsur and data[4] = tt
Compare 7 7 8
template[9] = sdsur and data[5] = trha
Compare 7 6 8
template[9] = sdsur and data[6] = htrha
Compare 6 6 7
template[9] = sdsur and data[7] = rnst
Compare 6 7 7
template[9] = sdsur and data[8] = trha
Compare 7 7 7
template[9] = sdsur and data[9] = sdsur
Compare 6 7 8
template[9] = sdsur and data[10] = sdsur
Compare 6 8 7
template[9] = sdsur and data[11] = sdsun
Compare 8 9 7
template[9] = sdsur and data[12] = sdsur
Compare 8 10 8
template[9] = sdsur and data[13] = sdsun
Compare 10 11 9
template[9] = sdsur and data[14] = sdsur
Compare 10 12 10
template[9] = sdsur and data[15] = rwt
Compare 12 13 11
template[9] = sdsur and data[16] = rwt
Compare 13 14 12
template[9] = sdsur and data[17] = exam
Compare 14 15 13
template[9] = sdsur and data[18] = exam
Compare 15 16 14
template[9] = sdsur and data[19] = exam
Compare 16 17 15
template[9] = sdsur and data[20] = hall
Compare 17 17 16
template[9] = sdsur and data[21] = trha
Compare 17 17 17
template[9] = sdsur and data[22] = htrha
Compare 17 17 18
template[9] = sdsur and data[23] = trha
Compare 17 18 18
template[9] = sdsur and data[24] = tt
Compare 18 19 18
template[9] = sdsur and data[25] = tr
Compare 19 19 19
template[9] = sdsur and data[26] = htrha
Compare 19 20 20
template[9] = sdsur and data[27] = sdsur
Compare 19 21 20
template[9] = sdsur and data[28] = sdsun
Compare 21 22 20
chkwtchngchktttrhahtrharnsttrhasdsursdsursdsunsdsursdsunsdsurrwtrwtexamexamexamhalltrhahtrhatrhatttrhtrhasdsursdsun
01234567891011121314151617181920212223242526272829
chk1012345678910111213141516171819202122232425262728
wt210123456789101112131415161718192021222324252627
chng32101234567891011121314151617181920212223242526
sdsur4321123456678910111213141516171819202122232425
hall5432223456778910111213141516161718192021222324
exam6543333456788910111213131415161718192021222324
hall7654444456789910111213141415151617181920212223
trha8765554555678910111213141515161516171819202122
tr9876665566678910111213141516161616171818192021
sdsur1098777666766789101112131415161717171819191920

10 29 Array
10 28 Array
9 27 Array
9 26 Array
8 25 Array
8 24 Array
8 23 Array
8 22 Array
7 21 Array
6 20 Array
6 19 Array
6 18 Array
5 17 Array
4 16 Array
4 15 Array
4 14 Array
4 13 Array
4 12 Array
4 11 Array
4 10 Array
3 9 Array
3 8 Array
3 7 Array
3 6 Array
3 5 Array
3 4 Array
3 3 Array
2 2 Array
1 1 Array
Array
30
0000123456678910111213131415151516171818191920
chkwtchngchktttrhahtrharnsttrhasdsursdsursdsunsdsursdsunsdsurrwtrwtexamexamexamhalltrhahtrhatrhatttrhtrhasdsursdsun
chkwtchng------sdsur------hallexam--halltrha---tr-sdsur-

0